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1

The Revised Classification of Eukaryotes

Sina M. Adl, Alastair G. B. Simpson, Christopher E. Lane, Julius Lukeš, David Bass, Samuel S. Bowser, Matthew W. Brown, Fabien Burki, Micah Dunthorn, Vladimir Hampl, Aaron Heiss, Mona Hoppenrath, Enri

Journal:

Journal of Eukaryotic Microbiology

Year:

2012

Language:

english

File:

PDF, 829 KB

english, 2012

2

How a neutral evolutionary ratchet can build cellular complexity

Julius Lukeš, John M. Archibald, Patrick J. Keeling, W. Ford Doolittle, Michael W. Gray

Journal:

Year:

2011

Language:

english

File:

PDF, 314 KB

english, 2011

3

Probing into the diversity of trypanosomatid flagellates parasitizing insect hosts in South-West China reveals both endemism and global dispersal

Jan Votýpka, Dmitri A. Maslov, Vyacheslav Yurchenko, Milan Jirků, Petr Kment, Zhao-Rong Lun, Julius Lukeš

Journal:

Molecular Phylogenetics and Evolution

Year:

2010

Language:

english

File:

PDF, 655 KB

english, 2010

4

A Model for Taxonomic Work on Homoxenous Coccidia: Redescription, Host Specificity, and Molecular Phylogeny of Eimeria ranae Dobell, 1909, with a Review of Anuran-Host Eimeria (Apicomplexa: Eimeriorina)

MILOSLAV JIRKŮ, MILAN JIRKŮ, MIROSLAV OBORNÍK, JULIUS LUKEŠ, DAVID MODRÝ

Journal:

Journal of Eukaryotic Microbiology

Year:

2009

Language:

english

File:

PDF, 960 KB

english, 2009

5

Translational initiation in Leishmania tarentolae and Phytomonas serpens (Kinetoplastida) is strongly influenced by pre-ATG triplet and its 5′ sequence context

Julius Lukeš, Zdeněk Paris, Sandesh Regmi, Reinhard Breitling, Sergey Mureev, Susanna Kushnir, Konstantin Pyatkov, Milan Jirků, Kirill A. Alexandrov

Journal:

Molecular and Biochemical Parasitology

Year:

2006

Language:

english

File:

PDF, 280 KB

english, 2006

6

(Self-) infections with parasites: re-interpretations for the present

Lukeš, Julius, Kuchta, Roman, Scholz, Tomáš, Pomajbíková, Kateřina

Journal:

Trends in Parasitology

Year:

2014

Language:

english

File:

PDF, 631 KB

english, 2014

7

The Organellar Genomes of Chromera and Vitrella , the Phototrophic Relatives of Apicomplexan Parasites

Oborník, Miroslav, Lukeš, Julius

Journal:

Annual Review of Microbiology

Year:

2015

Language:

english

File:

PDF, 1.78 MB

english, 2015

8

A tsetse and tabanid fly survey of African great apes habitats reveals the presence of a novel trypanosome lineage but the absence of Trypanosoma brucei

Votýpka, Jan, Rádrová, Jana, Skalický, Tomáš, Jirků, Milan, Jirsová, Dagmar, Mihalca, Andrei D., D’Amico, Gianluca, Petrželková, Klára J., Modrý, David, Lukeš, Julius

Journal:

International Journal for Parasitology

Year:

2015

Language:

english

File:

PDF, 1.46 MB

english, 2015

9

Aerobic mitochondria of parasitic protists: diverse genomes and complex functions

Zíková, Alena, Hampl, Vladimír, Paris, Zdeněk, Týč, Jiří, Lukeš, Julius

Journal:

Molecular and Biochemical Parasitology

Year:

2016

Language:

english

File:

PDF, 1.57 MB

english, 2016

10

Trypanosomatids Are Much More than Just Trypanosomes: Clues from the Expanded Family Tree

Lukeš, Julius, Butenko, Anzhelika, Hashimi, Hassan, Maslov, Dmitri A., Votýpka, Jan, Yurchenko, Vyacheslav

Journal:

Trends in Parasitology

Year:

2018

Language:

english

File:

PDF, 4.92 MB

english, 2018

11

Phosphorylation-Mediated Clearance of Amyloid-like Assemblies in Meiosis

Carpenter, Kayla, Bell, Rachel Brietta, Yunus, Julius, Amon, Angelika, Berchowitz, Luke Edwin

Journal:

Developmental Cell

Year:

2018

Language:

english

File:

PDF, 3.50 MB

english, 2018

12

Microsporidia: A Single Horizontal Gene Transfer Drives a Great Leap Forward

Lukeš, Julius, Husník, Filip

Journal:

Current Biology

Year:

2018

Language:

english

File:

PDF, 706 KB

english, 2018

13

Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes

Adl, Sina M., Bass, David, Lane, Christopher E., Lukeš, Julius, Schoch, Conrad L., Smirnov, Alexey, Agatha, Sabine, Berney, Cedric, Brown, Matthew W., Burki, Fabien, Cárdenas, Paco, Čepička, Ivan, Chi

Journal:

Journal of Eukaryotic Microbiology

Year:

2018

Language:

english

File:

PDF, 1.44 MB

english, 2018

14

In Love with Microsporidia for 60+ Years: Jiří Vávra Passed Away

Lukeš, Julius, Hyliš, Miroslav

Journal:

Journal of Eukaryotic Microbiology

Year:

2019

Language:

english

File:

PDF, 145 KB

english, 2019

15

Helminth Therapy – From the Parasite Perspective

Sobotková, Kateřina, Parker, William, Levá, Jana, Růžková, Jiřina, Lukeš, Julius, Jirků Pomajbíková, Kateřina

Journal:

Trends in Parasitology

Year:

2019

Language:

english

File:

PDF, 1.36 MB

english, 2019

16

Gene fragmentation and RNA editing without borders: eccentric mitochondrial genomes of diplonemids

Kaur, Binnypreet, Záhonová, Kristína, Valach, Matus, Faktorová, Drahomíra, Prokopchuk, Galina, Burger, Gertraud, Lukeš, Julius

Journal:

Nucleic Acids Research

Year:

2020

Language:

english

File:

PDF, 1.52 MB

english, 2020

17

Comment on “Does constructive neutral evolution play an important role in the origin of cellular complexity?” DOI 10.1002/bies.201100010

W. Ford Doolittle, Julius Lukeš, John M. Archibald, Patrick J. Keeling, Michael W. Gray

Journal:

Year:

2011

Language:

english

File:

PDF, 65 KB

english, 2011

18

Rational sub-division of plant trypanosomes (Phytomonas spp.) based on minicircle conserved region analysis

Nancy R. Sturm, Michel Dollet, Julius Lukeš, David A. Campbell

Journal:

Infection, Genetics and Evolution

Year:

2007

Language:

english

File:

PDF, 368 KB

english, 2007

19

A survey for piroplasmids in horses and Bactrian camels in North-Eastern Mongolia

Michal Sloboda, Milan Jirků, Daniela Lukešová, Moneeb Qablan, Zayat Batsukh, Ivan Fiala, Petr Hořín, David Modrý, Julius Lukeš

Journal:

Veterinary Parasitology

Year:

2011

Language:

english

File:

PDF, 203 KB

english, 2011

20

Dog shedding oocysts of Neospora caninum: PCR diagnosis and molecular phylogenetic approach

Jan R Šlapeta, David Modrý, Iveta Kyselová, Radek Hořejš, Julius Lukeš, Břetislav Koudela

Journal:

Veterinary Parasitology

Year:

2002

Language:

english

File:

PDF, 184 KB

english, 2002

21

Evolutionary relationships among cyst-forming coccidia Sarcocystis spp. (Alveolata: Apicomplexa: Coccidea) in endemic African tree vipers and perspective for evolution of heteroxenous life cycle

Jan R Šlapeta, David Modrý, Jan Votýpka, Milan Jirků, Julius Lukeš, Břetislav Koudela

Journal:

Molecular Phylogenetics and Evolution

Year:

2003

Language:

english

File:

PDF, 760 KB

english, 2003

22

Suramin blocks nucleotide triphosphate binding to ribosomal protein L3 from Trypanoplasma borreli

Nuraly K. Avliyakulov, Julius Lukeš, Andrey V. Kajava, Bo Liedberg, Ingemar Lundström, Samuel P. S. Svensson

Journal:

Year:

2000

Language:

english

File:

PDF, 1.09 MB

english, 2000

23

Towards a framework for the evolutionary genomics of Kinetoplastids: what kind of data and how much?

Alberto MR Dávila, Julius Lukeš

Journal:

Kinetoplastid Biology and Disease

Year:

2003

Language:

english

File:

PDF, 457 KB

english, 2003

24

Goussia chalupskyin. sp. (Apicomplexa: Eimeriidae) from the chubLeuciscus cephalus(Cyprinidae)

Journal:

Systematic Parasitology

Year:

1995

Language:

english

File:

PDF, 737 KB

english, 1995

25

Detection of chitin in spores ofMyxobolus muelleriandM. subepithelialis(Myxosporea, Myxozoa)

Julius Lukeš, Petr Volf, Jiří Lom

Journal:

Parasitology Research

Year:

1993

Language:

english

File:

PDF, 425 KB

english, 1993

26

Analysis of Ribosomal RNA Genes Suggests That Trypanosomes Are Monophyletic

Julius Lukeš, Milan Jirků, David Doležel, Ivica Kral'ová, Laura Hollar, Dmitri A. Maslov

Journal:

Journal of Molecular Evolution

Year:

1997

Language:

english

File:

PDF, 135 KB

english, 1997

27

Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates

Julius Lukeš, Hassan Hashimi, Alena Zíková

Journal:

Current Genetics

Year:

2005

Language:

english

File:

PDF, 513 KB

english, 2005

28

Gene fragmentation: a key to mitochondrial genome evolution in Euglenozoa?

Pavel Flegontov, Michael W. Gray, Gertraud Burger, Julius Lukeš

Journal:

Current Genetics

Year:

2011

Language:

english

File:

PDF, 250 KB

english, 2011

29

Notes on coccidian phylogeny, based on the apicoplast small subunit ribosomal DNA

Miroslav Oborník, Milan Jirků, Jan R. Šlapeta, David Modrý, Břetislav Koudela, Julius Lukeš

Journal:

Parasitology Research

Year:

2002

Language:

english

File:

PDF, 99 KB

english, 2002

30

Phylogeny and sequence variability of theSarcocystis singaporensisZaman and Colley, (1975) 1976 ssrDNA

Jan R. Šlapeta, Iveta Kyselová, Aaron O. Richardson, David Modrý, Julius Lukeš

Journal:

Parasitology Research

Year:

2002

Language:

english

File:

PDF, 115 KB

english, 2002

31

Phylogenetic position ofDracunculus medinensisand some related nematodes inferred from 18S rRNA

Martina Wijová, František Moravec, Aleš Horák, David Modrý, Julius Lukeš

Journal:

Parasitology Research

Year:

2005

Language:

english

File:

PDF, 198 KB

english, 2005

32

Mitochondrial membrane potential-based genome-wide RNAi screen ofTrypanosoma brucei

Zdeněk Verner, Zdeněk Paris, Julius Lukeš

Journal:

Parasitology Research

Year:

2010

Language:

english

File:

PDF, 172 KB

english, 2010

33

Unexpectedly high variability of the histone H4 gene inLeishmania

Julius Lukeš, Dmitri A. Maslov

Journal:

Parasitology Research

Year:

2000

Language:

english

File:

PDF, 90 KB

english, 2000

34

Evolution of the serum resistance-associatedSRAgene in African trypanosomes

DeHua Lai, QiaoPing Wang, Zhi Li, Lukeš Julius, ZhaoRong Lun

Journal:

Chinese Science Bulletin

Year:

2009

Language:

english

File:

PDF, 688 KB

english, 2009

35

Downregulation of the nuclear-encoded subunits of the complexes III and IV disrupts their respective complexes but not complex I in procyclic Trypanosoma brucei

Anton Horváth, Eva Horáková, Petra Dunajčíková, Zdeněk Verner, Eliška Pravdová, Iveta Šlapetová, L’udmila Cuninková, Julius Lukeš

Journal:

Molecular Microbiology

Year:

2005

Language:

english

File:

PDF, 653 KB

english, 2005

36

Mitochondrial fatty acid synthesis is required for normal mitochondrial morphology and function in Trypanosoma brucei

Jennifer L. Guler, Eva Kriegova, Terry K. Smith, Julius Lukeš, Paul T. Englund

Journal:

Molecular Microbiology

Year:

2008

Language:

english

File:

PDF, 660 KB

english, 2008

37

Ancestral roles of eukaryotic frataxin: mitochondrial frataxin function and heterologous expression of hydrogenosomal Trichomonas homologues in trypanosomes

Shaojun Long, Milan Jirků, Jan Mach, Michael L. Ginger, Robert Sutak, Des Richardson, Jan Tachezy, Julius Lukeš

Journal:

Molecular Microbiology

Year:

2008

Language:

english

File:

PDF, 925 KB

english, 2008

38

Stage-specific requirement for Isa1 and Isa2 proteins in the mitochondrion of Trypanosoma brucei and heterologous rescue by human and Blastocystis orthologues

Shaojun Long, Piya Changmai, Anastasios D. Tsaousis, Tomáš Skalický, Zdeněk Verner, Yan-Zi Wen, Andrew J. Roger, Julius Lukeš

Journal:

Molecular Microbiology

Year:

2011

Language:

english

File:

PDF, 933 KB

english, 2011

39

Life Cycle of Goussia pannonica (Molnar, 1989) (Apicomplexa, Eimeriorina), an Extracytoplasmic Coccidium from the White Bream Blicca bjoerkna

Journal:

Journal of Eukaryotic Microbiology

Year:

1992

Language:

english

File:

PDF, 5.31 MB

english, 1992

40

Monophyly of Endosymbiont Containing Trypanosomatids: Phylogeny versus Taxonomy

Laura Hollar, Julius Lukeš, Dmitri A. Maslov

Journal:

Journal of Eukaryotic Microbiology

Year:

1998

Language:

english

File:

PDF, 808 KB

english, 1998

41

Molecular Phylogenetic Relatedness of Frenkelia spp. (Protozoa, Apicomplexa) to Sarcocystis falcatula Stiles 1893: Is the Genus Sarcocystis Paraphyletic?

Jan Votypka, Vaclav Hypša, Milan Jirku, Jaroslav Flegr, Jiri Vavra, Julius Lukes

Journal:

Journal of Eukaryotic Microbiology

Year:

1998

Language:

english

File:

PDF, 544 KB

english, 1998

42

IN MEMORIAM: SERGEI PODLIPAEV (1947–2004)

Julius Lukeš, Michel Dollet, Dmitri Maslov, David Campbell

Journal:

Journal of Eukaryotic Microbiology

Year:

2004

Language:

english

File:

PDF, 389 KB

english, 2004

43

Diversity of Insect Trypanosomatids Assessed from the Spliced Leader RNA and 5s rRNA Genes and Intergenic Regions

SERGEI A. PODLIPAEV, NANCY R. STURM, IVAN FIALA, OCTAVIO FERNANDES, SCOTT J. WESTENBERGER, MICHEL DOLLET, DAVID A. CAMPBELL, JULIUS LUKEŠ

Journal:

Journal of Eukaryotic Microbiology

Year:

2004

Language:

english

File:

PDF, 948 KB

english, 2004

44

An Integrated Morphological and Molecular Approach to a New Species Description in the Trypanosomatidae: the Case of Leptomonas podlipaevi n. sp., a Parasite of Boisea rubrolineata (Hemiptera: Rhopalidae)

VYACHESLAV YURCHENKO, JULIUS LUKEŠ, XING XU, DMITRI A. MASLOV

Journal:

Journal of Eukaryotic Microbiology

Year:

2006

Language:

english

File:

PDF, 1.20 MB

english, 2006

45

Trachipleistophora extenrec n. sp. a New Microsporidian (Fungi: Microsporidia) Infecting Mammals

JIŘÍ VÁVRA, ALEŠ HORÁK, DAVID MODRÝ, JULIUS LUKEŠ, BŘETISLAV KOUDELA

Journal:

Journal of Eukaryotic Microbiology

Year:

2006

Language:

english

File:

PDF, 3.65 MB

english, 2006

46

Description of Rhynchopus euleeides n. sp. (Diplonemea), a Free-Living Marine Euglenozoan

JOANNIE ROY, DRAHOMÍRA FAKTOROVÁ, OLDŘICH BENADA, JULIUS LUKEŠ, GERTRAUD BURGER

Journal:

Journal of Eukaryotic Microbiology

Year:

2007

Language:

english

File:

PDF, 2.34 MB

english, 2007

47

Two New Species of Trypanosomatid Parasites Isolated from Heteroptera in Costa Rica

DMITRI A. MASLOV, VYACHESLAV Y. YURCHENKO, MILAN JIRKŮ, JULIUS LUKEŠ

Journal:

Journal of Eukaryotic Microbiology

Year:

2010

Language:

english

File:

PDF, 989 KB

english, 2010

48

Two sequence classes of kinetoplastid 5S ribosomal RNA gene revealed among bodonid spliced leader RNA gene arrays

Débora M. Santana, Julius Lukeš, Nancy R. Sturm, David A. Campbell

Journal:

FEMS Microbiology Letters

Year:

2001

Language:

english

File:

PDF, 343 KB

english, 2001

49

Characterization of the NADH:ubiquinone oxidoreductase (complex I) in the trypanosomatid Phytomonas serpens (Kinetoplastida)

Petra C̆ermáková, Zdene˘k Verner, Petr Man, Julius Lukeš, Anton Horváth

Journal:

Year:

2007

Language:

english

File:

PDF, 739 KB

english, 2007

50

Functions and cellular localization of cysteine desulfurase and selenocysteine lyase in Trypanosoma brucei

Pavel Poliak, Douglas Van Hoewyk, Miroslav Oborník, Alena Zíková, Kenneth D. Stuart, Jan Tachezy, Marinus Pilon, Julius Lukeš

Journal:

Year:

2010

Language:

english

File:

PDF, 397 KB

english, 2010

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